Enhancing Genomic Data Analysis with Machine Learning

Open
Re:Pair Genomics Inc.
Vaughan, Ontario, Canada
Operations Coordinator
Project
Academic experience or paid work
60 hours of work total
Participant
Anywhere
Advanced level

Project scope

Categories
Data modelling Machine learning Artificial intelligence
Skills
algorithms data processing machine learning performance appraisal adaptability genomics data analysis bioinformatics research
Details

Re:Pair Genomics Inc. is seeking to enhance its bioinformatics algorithms by integrating machine learning techniques to improve the accuracy and efficiency of genomic data analysis. The current algorithms, while effective, can benefit from the predictive power and adaptability of machine learning models. The project aims to identify specific areas within the existing bioinformatics pipeline where machine learning can be applied to optimize performance. Students will be tasked with researching and selecting appropriate machine learning models, training these models on existing genomic datasets, and evaluating their performance against current methods. The goal is to achieve a measurable improvement in data processing speed and accuracy, ultimately contributing to more precise genomic interpretations.

Deliverables

- A comprehensive report detailing the research and selection process of machine learning models suitable for bioinformatics applications.


- A prototype implementation of the selected machine learning model integrated into the existing bioinformatics pipeline.


- A performance evaluation comparing the enhanced algorithm with the current system, highlighting improvements in accuracy and processing speed.


- A presentation summarizing the project findings and demonstrating the enhanced algorithm's capabilities.

Mentorship
Domain expertise and knowledge

Providing specialized, in-depth knowledge and general industry insights for a comprehensive understanding.

Regular meetings

Scheduled check-ins to discuss progress, address challenges, and provide feedback.

About the company

Company
Vaughan, Ontario, Canada
11 - 50 employees
Science, Technology
Representation
Minority-Owned Women-Owned Small Business Youth-Owned Immigrant-Owned

Re:Pair Genomics uses AI to design compact synthetic promoters, which are DNA sequences required for gene therapies to target specific cell types. Rather than spending six months to a year to design and validate promoters manually, our algorithm can produce designs ready for testing within a day.